The article presents studies of the influence of Amanita muscaria and Flammulina velutipes on the growth and development of seedlings of species of the Pinaceae family. The positive effect of mycorrhization by these fungi species on the growth and development of Picea abies and Abies sibirica was established. Thus, the presence of Flammulina velutipes and Amanita muscaria in the substrate accelerated the appearance of the first shoots by 4–8 days. Mycorrhization of Amanita muscaria influenced the morphometry of the seedlings of Picea abies and Abies sibirica.